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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 15745.5
Min RPKM: 381.6
Std RPKM: 2821.9
Median RPKM: 4930.6
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
15745.5
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
13616.2
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
12895.7
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
12030.7
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
11701.2
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
11142.4
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
10624.1
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
9289.8
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
9279.3
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
8955.3
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
8221.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
8078.2
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
8009.9
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
7681.8
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
7609.8
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
7580.3
GTEX-11I78-2026-SM-5987C
50-59 years, female
7521.6
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
7377.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
7352.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
7344.0
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
7342.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
7259.4
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
7178.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
7143.1
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
7109.0
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
6966.1
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
6877.4
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
6835.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
6814.2
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
6779.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
6757.2
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
6653.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
6591.2
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
6585.2
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
6460.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
6392.4
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
6334.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
5897.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
5889.0
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
5830.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
5826.0
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
5818.5
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
5789.4
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
5271.6
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
5206.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
5166.1
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
4972.6
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
4971.6
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
4889.7
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
4863.9
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
4858.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
4751.3
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
4723.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
4705.2
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
4669.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
4650.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
4650.5
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
4622.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
4493.1
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
4463.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
4425.9
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
4397.6
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
4181.4
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
4160.8
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
3966.1
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
3962.6
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
3946.0
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
3945.4
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
3870.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
3712.6
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
3455.0
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
3454.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
3366.8
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
3342.4
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
3268.0
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
3204.7
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
3003.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
2908.5
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
2878.9
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
2858.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
2779.2
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
2742.9
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
2684.6
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
2587.1
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
2578.5
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
2576.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
2562.3
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
2495.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
2408.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
2308.2
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1907.6
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
1900.1
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
1756.8
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
1250.6
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
599.9
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
381.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.