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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 11471.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 24083.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 44092.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 17253.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 16387.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 30822.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 29857
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 13192.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 86685.0
Min RPKM: 983.5
Std RPKM: 13900.0
Median RPKM: 24155.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
86685.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
59369.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
57553.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
53748.2
GTEX-13112-1426-SM-5EGH8
50-59 years, male
50874.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
48676.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
48098.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
47724.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
47634.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
47616.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
46247.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
45979.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
45819.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
45217.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
44370.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
44098.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
43732.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
43618.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
42851.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
42827.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
42823.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
42251.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
42049.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
41527.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
41292.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
41228.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
40867.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
40530.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
40381.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
40082.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
39135.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
38507.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
36590.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
36105.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
35922.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
33672.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
32708.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
32177.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
32176.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
32154.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
32093.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
32069.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
32047.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
31874.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
31847.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
30092.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
29877.1
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
28912.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
28808.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
28164.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
27978.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
27960.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
27892.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
25891.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
25181.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
24984.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
24733.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
24466.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
24255.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
24155.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
24135.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
24087.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
24057.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
23474.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
23272.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
23027.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
22430.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
22375.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
22171.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
21022.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
20824.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
20732.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
20582.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
20367.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
20085.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
19889.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
19449.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
18693.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
18308.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
18209.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
17943.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
17912.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
17824.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
17809.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
17238.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
16868.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
16494.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
16365.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
15982.9
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
15913.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
15801.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
15784.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
15764.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
15668.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
15266.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
15105.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
15004.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
14635.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
14415.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
14351.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
14263.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
14078.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
14023.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
13386.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
13192.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
12466.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
12429.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
12326.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
12251.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
11955.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
11920.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
11463.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
10870.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
10870.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
10212.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
8946.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
8888.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
8598.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
983.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.