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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 4025.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 61.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 54.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 59.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 38.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 105.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 134.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 40.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 14447.5
Min RPKM: 628.9
Std RPKM: 2585.0
Median RPKM: 2871.2
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
14447.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
11881.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
11716.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
11157.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
10800.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
9792.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
9132.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
8620.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
8016.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
7996.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
7877.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
6933.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
6812.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
6591.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
6280.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
6277.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
6058.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
5986.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
5884.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
5787.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
5602.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
5472.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
5456.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
5330.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
5312.7
GTEX-13112-1426-SM-5EGH8
50-59 years, male
5254.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
5142.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
5116.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
5047.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
5021.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
4827.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
4754.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
4754.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
4686.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
4637.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
4386.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
4278.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
4249.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
4147.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
4135.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
4120.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
4094.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
3949.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
3918.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
3911.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
3891.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
3837.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
3823.8
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
3701.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
3625.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
3470.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
3316.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
3304.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
3214.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
3091.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
3085.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
3076.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
3052.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
3023.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
2871.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
2786.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
2728.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
2714.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
2712.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
2712.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
2677.5
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
2652.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
2621.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
2609.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
2597.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
2553.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
2454.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
2440.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
2438.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
2416.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
2411.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
2294.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
2287.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
2263.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
2152.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
2144.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
2096.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
2071.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
2061.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
2050.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
2047.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
2031.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
2025.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
2015.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
2004.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1938.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
1882.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1876.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1874.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1868.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1858.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1847.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
1834.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1770.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
1705.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1673.8
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1670.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1625.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1621.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1590.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1570.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
1447.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
1355.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
1350.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1319.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1268.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
1252.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1174.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
1159.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1115.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
1072.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
963.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
899.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
628.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
