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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 2277.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2764.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2213.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 3050.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 2217.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 3311.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2731.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 3485.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1267.0
Min RPKM: 2.7
Std RPKM: 343.3
Median RPKM: 283.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1267.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
1222.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1203.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1169.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
1116.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
1070.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
997.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
973.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
956.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
955.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
932.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
931.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
883.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
877.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
873.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
859.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
852.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
842.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
805.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
794.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
782.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
738.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
731.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
715.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
706.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
695.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
691.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
680.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
661.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
652.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
645.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
625.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
591.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
575.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
568.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
559.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
552.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
524.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
522.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
486.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
479.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
469.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
453.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
451.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
444.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
423.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
378.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
367.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
357.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
354.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
328.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
323.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
316.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
316.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
310.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
308.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
301.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
292.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
288.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
283.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
263.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
257.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
253.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
248.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
248.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
248.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
241.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
223.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
220.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
219.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
217.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
215.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
211.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
202.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
201.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
191.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
184.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
165.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
162.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
161.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
136.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
132.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
131.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
121.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
108.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
99.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
95.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
89.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
88.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
81.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
76.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
68.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
61.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
54.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
47.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
47.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
40.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
33.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
32.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
30.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
30.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
30.2
GTEX-REY6-1226-SM-48FDR
60-69 years, male
27.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
26.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
25.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
24.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
20.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
19.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
17.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
11.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
11.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
8.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
8.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
6.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
6.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
6.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
6.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
5.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
2.7
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.