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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 963.7
Min RPKM: 290.9
Std RPKM: 105.2
Median RPKM: 463.5
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
963.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
703.3
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
669.9
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
667.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
655.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
653.3
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
652.5
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
652.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
646.3
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
635.5
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
621.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
615.8
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
615.4
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
605.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
595.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
595.6
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
594.1
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
584.5
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
573.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
569.1
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
566.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
550.1
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
541.6
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
534.9
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
515.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
513.4
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
512.3
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
510.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
508.5
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
507.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
506.0
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
496.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
491.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
488.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
487.6
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
487.3
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
486.6
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
484.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
483.4
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
483.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
479.5
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
473.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
473.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
473.5
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
468.4
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
467.8
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
464.8
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
464.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
462.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
456.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
448.5
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
446.8
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
446.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
446.1
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
440.5
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
436.7
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
432.8
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
432.8
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
431.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
428.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
424.8
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
422.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
421.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
420.2
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
420.1
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
414.4
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
409.5
GTEX-QCQG-1226-SM-48U23
50-59 years, female
408.9
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
408.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
407.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
407.6
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
404.5
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
400.1
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
399.2
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
397.6
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
396.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
393.7
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
392.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
392.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
391.8
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
390.8
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
386.0
GTEX-S341-1226-SM-4AD5S
40-49 years, female
384.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
384.6
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
381.1
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
380.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
377.7
GTEX-11I78-2026-SM-5987C
50-59 years, female
377.4
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
375.4
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
362.2
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
361.8
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
353.7
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
340.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
328.7
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
300.8
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
290.9
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.