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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 528.0
Min RPKM: 93.7
Std RPKM: 93.9
Median RPKM: 236.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
528.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
485.4
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
474.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
444.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
432.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
431.8
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
428.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
416.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
387.2
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
382.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
373.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
372.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
360.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
360.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
353.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
352.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
344.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
341.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
338.0
GTEX-1192X-2526-SM-59868
50-59 years, male
331.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
324.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
314.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
305.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
301.2
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
290.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
287.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
285.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
277.6
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
275.3
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
274.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
273.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
272.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
268.0
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
265.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
265.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
254.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
248.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
247.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
247.5
GTEX-117YX-0326-SM-5GICL
50-59 years, male
242.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
240.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
240.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
239.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
237.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
235.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
235.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
234.7
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
228.6
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
227.7
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
227.0
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
222.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
222.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
221.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
221.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
217.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
216.3
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
214.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
213.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
206.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
205.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
205.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
202.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
200.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
195.5
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
194.8
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
191.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
190.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
188.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
180.7
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
176.4
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
172.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
172.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
167.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
164.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
159.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
157.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
157.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
154.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
153.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
151.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
147.3
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
137.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
135.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
121.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
112.4
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
106.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
102.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
93.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.