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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 950.7
Min RPKM: 212.9
Std RPKM: 139.5
Median RPKM: 369.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
950.7
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
880.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
690.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
677.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
660.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
656.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
643.2
GTEX-1192X-2526-SM-59868
50-59 years, male
640.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
627.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
610.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
598.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
554.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
535.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
511.3
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
504.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
486.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
485.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
473.3
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
469.4
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
467.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
463.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
461.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
455.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
440.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
437.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
435.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
433.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
427.7
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
426.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
421.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
421.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
414.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
413.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
412.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
403.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
399.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
392.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
387.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
380.9
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
377.7
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
376.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
375.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
374.2
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
370.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
369.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
365.7
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
356.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
353.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
351.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
350.1
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
344.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
339.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
338.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
337.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
336.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
334.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
334.3
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
328.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
325.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
325.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
318.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
314.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
310.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
308.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
304.5
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
303.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
300.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
297.7
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
297.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
289.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
288.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
287.2
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
285.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
285.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
283.4
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
282.4
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
267.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
263.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
260.2
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
258.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
249.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
245.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
245.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
243.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
241.4
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
238.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
219.2
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
212.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.