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CFD
COLON - Expression summary
RNA expressioni
HPA:38.2TPM
GTEx:161.8RPKM
FANTOM5:480.2Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 38.2
overview Male, age 54 Sample 1
TPM: 60.2
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 60.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 29.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 168.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 82.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 13.6
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 9.1
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 6.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 6.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 6.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 32.1
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 13.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 161.8
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 149.0
Samples: 149

Max RPKM: 889.3
Min RPKM: 2.2
Std RPKM: 137.9
Median RPKM: 110.1
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 889.3
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 676.7
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 548.9
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 538.0
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 510.1
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 499.3
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 457.6
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 390.7
GTEX-14C39-1626-SM-5S2P4 40-49 years, male 388.7
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 375.4
Show all
Colon - Transverse
RPKM: 171.6
Samples: 196

Max RPKM: 1518.9
Min RPKM: 6.5
Std RPKM: 176.3
Median RPKM: 110.6
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 1518.9
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 880.4
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 737.2
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 736.7
GTEX-145ME-0826-SM-5O9AF 40-49 years, female 700.7
GTEX-11ONC-2026-SM-5HL61 60-69 years, male 696.2
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 603.6
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 573.2
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 571.6
GTEX-13W3W-2126-SM-5K7UX 60-69 years, female 563.4
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 480.2
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 291.1
FF:10014-101C5 62,83,84 years, mixed 480.2

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.