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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 668.2
Min RPKM: 134.6
Std RPKM: 103.8
Median RPKM: 318.8
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
668.2
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
557.2
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
507.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
505.0
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
502.7
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
495.5
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
484.1
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
479.1
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
475.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
462.8
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
443.6
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
443.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
436.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
433.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
425.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
421.2
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
419.9
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
418.8
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
414.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
414.1
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
411.4
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
406.4
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
396.2
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
393.4
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
389.3
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
386.3
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
384.6
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
376.6
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
370.3
GTEX-QCQG-1226-SM-48U23
50-59 years, female
367.4
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
366.3
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
359.6
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
359.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
358.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
355.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
349.9
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
347.7
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
341.8
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
341.2
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
338.6
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
338.2
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
336.7
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
333.3
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
333.2
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
323.0
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
322.5
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
321.3
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
319.0
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
318.6
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
317.8
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
317.3
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
316.9
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
311.6
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
311.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
308.8
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
308.7
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
308.6
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
302.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
300.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
297.0
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
291.0
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
290.5
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
280.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
279.1
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
277.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
267.5
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
263.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
261.2
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
261.1
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
255.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
240.5
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
233.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
230.3
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
225.2
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
224.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
218.9
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
217.9
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
216.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
213.7
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
204.2
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
203.8
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
202.6
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
195.0
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
193.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
192.1
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
191.7
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
185.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
182.3
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
179.5
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
174.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
174.1
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
173.6
GTEX-S341-1226-SM-4AD5S
40-49 years, female
172.4
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
146.1
GTEX-11I78-2026-SM-5987C
50-59 years, female
142.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
134.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.