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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 452.2
Min RPKM: 146.3
Std RPKM: 54.7
Median RPKM: 255.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
452.2
GTEX-1192X-2526-SM-59868
50-59 years, male
375.2
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
374.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
373.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
367.2
GTEX-117YX-0326-SM-5GICL
50-59 years, male
345.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
336.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
329.5
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
327.5
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
321.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
320.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
315.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
314.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
305.6
GTEX-13O61-1326-SM-5KM31
60-69 years, male
304.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
302.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
302.1
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
301.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
299.3
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
295.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
294.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
293.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
293.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
293.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
291.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
291.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
287.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
287.6
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
279.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
278.4
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
277.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
276.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
276.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
273.9
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
272.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
269.7
GTEX-ZTSS-0926-SM-59865
40-49 years, male
266.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
264.9
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
264.5
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
264.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
260.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
258.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
258.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
256.5
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
255.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
254.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
253.4
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
252.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
250.6
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
248.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
246.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
246.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
245.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
244.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
242.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
242.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
242.6
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
242.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
240.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
235.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
234.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
230.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
227.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
226.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
226.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
223.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
223.4
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
222.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
221.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
220.1
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
213.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
211.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
210.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
207.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
207.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
205.1
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
204.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
203.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
197.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
187.9
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
184.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
183.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
172.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
171.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
165.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
160.4
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
148.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
146.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.