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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 3376.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2849.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 2533.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 3765.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 2783.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 2677.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2965.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 4069.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1292.4
Min RPKM: 11.1
Std RPKM: 283.7
Median RPKM: 464.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1292.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1259.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1149.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1125.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
1121.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1004.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
896.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
895.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
886.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
866.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
864.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
861.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
854.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
848.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
833.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
833.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
807.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
804.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
796.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
790.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
786.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
783.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
775.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
756.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
736.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
719.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
714.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
713.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
712.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
687.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
673.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
664.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
653.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
647.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
609.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
595.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
591.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
583.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
579.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
568.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
566.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
563.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
561.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
557.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
557.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
552.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
547.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
539.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
518.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
515.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
514.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
507.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
500.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
494.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
492.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
489.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
486.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
484.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
478.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
464.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
462.6
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
455.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
450.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
449.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
448.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
436.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
420.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
399.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
398.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
385.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
383.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
381.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
376.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
366.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
366.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
366.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
363.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
358.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
357.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
354.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
347.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
343.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
336.0
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
335.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
328.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
327.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
322.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
315.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
306.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
296.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
281.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
255.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
249.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
247.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
238.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
235.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
230.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
220.5
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
218.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
186.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
186.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
166.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
152.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
148.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
140.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
136.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
106.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
96.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
88.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
77.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
69.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
65.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
55.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
51.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
45.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
35.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
33.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
29.0
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
11.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.