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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1272
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 2663.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1377.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1664.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 4067.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 2411.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2435.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 2669.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 4475.5
Min RPKM: 42.8
Std RPKM: 1145.1
Median RPKM: 950.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
4475.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
4187.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
4123.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
4028.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
3831.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
3763.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
3639.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
3622.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
3595.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
3589.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
3571.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
3509.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
3412.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
2881.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
2838.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
2746.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
2658.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
2476.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
2338.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
2321.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
2231.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
2227.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
2215.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
2193.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
2149.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
2122.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
2063.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
2051.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1898.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1873.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
1859.7
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
1833.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
1801.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1766.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1727.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
1698.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
1651.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
1633.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1595.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
1537.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
1488.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
1450.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1434.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1413.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1373.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
1234.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1200.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1170.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
1166.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
1141.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1123.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1099.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1099.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1081.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
1066.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
1017.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
979.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
954.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
950.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
950.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
944.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
935.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
908.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
779.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
736.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
731.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
707.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
703.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
662.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
633.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
631.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
629.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
619.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
603.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
599.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
586.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
585.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
542.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
539.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
527.1
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
509.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
506.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
488.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
449.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
436.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
376.7
GTEX-1399T-0826-SM-5IFES
60-69 years, male
370.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
369.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
340.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
333.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
317.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
289.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
282.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
282.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
271.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
265.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
245.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
239.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
215.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
200.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
196.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
191.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
178.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
171.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
170.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
167.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
156.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
152.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
148.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
133.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
129.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
126.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
123.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
120.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
116.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
110.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
101.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
95.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
42.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.