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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2459.0
Min RPKM: 0.2
Std RPKM: 575.3
Median RPKM: 599.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
2459.0
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
2107.0
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
1860.5
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
1828.8
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
1801.9
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
1558.3
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
1476.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
1446.0
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
1370.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
1354.3
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
1316.7
GTEX-S341-1226-SM-4AD5S
40-49 years, female
1300.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
1280.3
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
1243.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
1227.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
1197.0
GTEX-11I78-2026-SM-5987C
50-59 years, female
1184.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
1178.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
1171.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
1145.5
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
1119.8
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
1076.3
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1067.4
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
1061.2
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
1046.8
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
1036.0
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
1020.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
971.6
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
945.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
943.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
933.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
925.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
921.7
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
913.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
842.3
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
819.1
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
784.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
780.2
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
754.3
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
750.3
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
733.1
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
726.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
706.1
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
678.7
GTEX-QCQG-1226-SM-48U23
50-59 years, female
647.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
644.7
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
631.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
599.7
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
599.6
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
570.9
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
527.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
527.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
388.6
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
382.3
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
374.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
363.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
358.0
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
336.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
331.9
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
329.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
285.4
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
263.9
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
226.7
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
160.6
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
149.5
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
140.2
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
114.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
111.4
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
84.6
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
76.2
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
75.5
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
41.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
41.3
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
21.8
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
20.0
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
15.4
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
9.0
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
3.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
2.1
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
1.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
1.8
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
1.6
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
1.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
1.2
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
1.1
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
1.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
1.0
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
0.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
0.7
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
0.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
0.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
0.4
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
0.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
0.4
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
0.4
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
0.2
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.