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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 654.0
Min RPKM: 254.0
Std RPKM: 88.4
Median RPKM: 374.9
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
654.0
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
609.3
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
600.4
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
587.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
548.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
531.2
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
529.6
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
524.6
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
523.2
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
513.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
498.2
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
498.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
497.1
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
496.5
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
494.0
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
489.4
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
478.0
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
475.0
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
474.2
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
457.3
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
455.2
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
448.8
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
447.9
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
447.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
444.6
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
429.2
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
428.3
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
427.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
423.3
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
418.8
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
414.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
413.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
408.5
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
406.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
405.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
403.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
399.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
394.0
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
392.2
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
391.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
389.3
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
388.2
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
386.1
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
381.9
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
380.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
378.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
376.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
375.4
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
374.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
372.9
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
370.5
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
370.1
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
368.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
363.3
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
362.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
361.0
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
355.1
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
354.5
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
352.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
346.9
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
345.2
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
344.8
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
344.4
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
343.2
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
339.7
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
339.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
331.5
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
327.7
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
327.6
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
326.6
GTEX-QCQG-1226-SM-48U23
50-59 years, female
321.0
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
320.9
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
312.5
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
310.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
308.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
307.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
305.0
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
300.5
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
296.2
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
296.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
294.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
294.4
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
291.9
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
287.7
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
287.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
283.9
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
281.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
280.5
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
276.2
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
275.9
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
274.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
264.3
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
263.6
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
259.6
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
258.7
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
254.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.