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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 518.3
Min RPKM: 102.4
Std RPKM: 78.8
Median RPKM: 235.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
518.3
GTEX-1192X-2526-SM-59868
50-59 years, male
487.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
393.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
391.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
367.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
365.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
360.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
355.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
342.9
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
331.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
323.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
321.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
320.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
315.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
315.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
310.0
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
305.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
304.7
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
299.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
294.4
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
292.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
291.5
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
289.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
286.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
279.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
277.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
276.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
271.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
267.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
267.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
266.7
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
266.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
264.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
257.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
255.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
253.4
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
251.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
245.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
243.9
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
242.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
240.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
239.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
238.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
237.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
233.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
232.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
230.5
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
230.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
222.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
221.2
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
213.2
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
209.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
205.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
204.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
203.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
203.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
198.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
196.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
196.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
193.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
193.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
191.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
190.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
188.4
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
181.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
180.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
173.9
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
173.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
173.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
173.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
172.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
172.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
171.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
170.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
167.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
166.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
165.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
152.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
152.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
145.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
141.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
138.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
137.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
133.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
122.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
120.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
118.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
102.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.