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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 45.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 15.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 23.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 33.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 25.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 73.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 70.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 94.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 360.5
Min RPKM: 38.0
Std RPKM: 42.9
Median RPKM: 118.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
360.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
286.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
242.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
241.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
221.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
216.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
198.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
189.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
188.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
178.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
178.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
172.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
168.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
165.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
163.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
163.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
162.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
161.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
161.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
158.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
154.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
153.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
150.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
149.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
145.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
143.9
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
143.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
143.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
143.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
141.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
141.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
140.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
138.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
138.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
136.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
135.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
133.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
132.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
130.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
129.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
129.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
129.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
129.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
126.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
125.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
124.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
123.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
122.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
122.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
122.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
122.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
122.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
122.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
120.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
120.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
119.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
119.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
118.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
118.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
118.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
118.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
117.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
116.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
116.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
116.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
115.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
114.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
114.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
113.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
113.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
112.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
112.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
111.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
110.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
110.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
110.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
108.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
108.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
108.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
107.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
105.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
105.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
105.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
104.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
104.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
104.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
103.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
102.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
102.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
101.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
100.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
100.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
99.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
96.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
96.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
96.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
95.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
94.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
94.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
91.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
91.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
90.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
90.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
89.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
88.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
88.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
88.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
87.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
86.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
84.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
84.0
GTEX-11GSP-0626-SM-5986T
60-69 years, female
82.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
81.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
81.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
80.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
79.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
77.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
71.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
38.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.