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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 2.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 0.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 0
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 0
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 0
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 0.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 3.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 12.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2717.9
Min RPKM: 0.1
Std RPKM: 505.4
Median RPKM: 111.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
2717.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
2578.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
2154.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1817.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
1755.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
1666.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1593.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
916.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
868.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
856.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
838.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
811.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
806.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
797.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
771.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
749.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
664.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
657.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
638.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
622.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
525.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
514.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
507.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
458.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
455.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
448.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
439.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
435.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
429.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
429.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
406.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
383.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
381.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
373.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
364.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
338.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
334.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
329.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
316.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
290.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
283.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
279.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
232.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
230.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
219.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
212.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
193.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
191.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
190.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
180.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
167.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
158.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
155.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
152.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
151.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
144.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
119.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
115.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
114.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
111.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
110.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
104.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
98.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
92.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
89.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
83.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
80.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
79.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
70.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
61.6
GTEX-R53T-0326-SM-48FEC
50-59 years, female
61.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
58.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
56.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
56.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
53.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
48.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
43.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
40.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
37.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
36.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
36.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
34.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
28.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
27.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
27.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
21.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
20.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
18.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
18.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
18.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
14.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
12.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
11.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
10.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
9.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
9.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
8.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
6.9
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
6.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
6.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
6.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
5.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
5.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
4.9
GTEX-11GSP-0626-SM-5986T
60-69 years, female
4.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
4.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
3.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
3.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
2.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
2.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
1.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
1.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
0.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
0.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
0.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
0.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
0.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
0.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
0.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.