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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
- Antibody HPA050902
Glial cells
Not detected
Neuronal cells
Medium
Neuronal projections
Not detected
Synapses
Not detected
HYPOTHALAMUS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 80.2
Min RPKM: 2.5
Std RPKM: 18.2
Median RPKM: 27.8
GTEX-13OW7-0011-R8b-SM-5L3HR
50-59 years, male
80.2
GTEX-X585-0011-R8A-SM-46MUX
50-59 years, male
76.2
GTEX-X4XX-0011-R8B-SM-46MWM
60-69 years, male
66.2
GTEX-13OW6-0011-R8a-SM-5L3GF
50-59 years, male
65.9
GTEX-13CIG-0011-R8b-SM-5LZX5
50-59 years, male
60.1
GTEX-13OVH-0011-R8b-SM-5MR35
70-79 years, male
59.6
GTEX-13N1W-0011-R8a-SM-5MR56
70-79 years, male
57.9
GTEX-13QIC-0011-R8b-SM-5O9CV
60-69 years, female
56.9
GTEX-14ASI-0011-R8b-SM-5S2UB
60-69 years, male
56.7
GTEX-13O3Q-0011-R8b-SM-5KM2J
50-59 years, male
55.6
GTEX-13X6K-0011-R8b-SM-5PNZ4
60-69 years, female
51.8
GTEX-13SLW-0011-R8b-SM-5SI64
70-79 years, male
51.7
GTEX-RU72-0011-R8A-SM-2TF61
50-59 years, female
51.5
GTEX-13G51-0011-R8b-SM-5LZZ4
60-69 years, male
51.3
GTEX-QVJO-0011-R8A-SM-447C7
60-69 years, female
49.5
GTEX-11OF3-0011-R8b-SM-57WCS
60-69 years, male
48.4
GTEX-131XH-0011-R8a-SM-5EGLL
50-59 years, male
48.1
GTEX-13NYB-0011-R8a-SM-5KM4R
40-49 years, male
47.1
GTEX-13FXS-0011-R8a-SM-5J1MN
50-59 years, male
46.8
GTEX-13NZA-0011-R8b-SM-5KM2Q
60-69 years, male
46.7
GTEX-S7SE-0011-R8A-SM-2XCDG
50-59 years, male
45.7
GTEX-1399T-0011-R8b-SM-5IJD8
60-69 years, male
44.9
GTEX-NPJ7-0011-R8a-SM-2I3G2
60-69 years, female
44.4
GTEX-NL4W-0011-R8a-SM-2I3G4
50-59 years, male
44.3
GTEX-13RTJ-0011-R8b-SM-5O9DL
60-69 years, male
44.0
GTEX-QVUS-0011-R8A-SM-3GAD7
60-69 years, female
43.8
GTEX-NPJ8-0011-R8a-SM-2HMLG
40-49 years, male
42.2
GTEX-YFC4-0011-R8a-SM-4SOK3
40-49 years, female
41.1
GTEX-WZTO-0011-R8A-SM-4E3II
40-49 years, male
39.0
GTEX-145LS-0011-R8b-SM-5PNXA
60-69 years, female
38.5
GTEX-11ONC-0011-R8b-SM-5NQ87
60-69 years, male
38.4
GTEX-12ZZX-0011-R8a-SM-5DUW8
40-49 years, female
38.2
GTEX-1313W-0011-R8a-SM-5DUVM
50-59 years, female
38.1
GTEX-13FLV-0011-R8a-SM-5LZZE
50-59 years, male
36.9
GTEX-13OW5-0011-R8a-SM-5L3GQ
60-69 years, male
35.1
GTEX-TSE9-0011-R8A-SM-3DB7R
60-69 years, female
34.3
GTEX-R55F-0011-R8A-SM-2TF4F
50-59 years, male
34.2
GTEX-13IVO-0011-R8a-SM-5L3DY
70-79 years, male
33.6
GTEX-P44H-0011-R8A-SM-2XCEL
40-49 years, male
31.1
GTEX-PWO3-0011-R8A-SM-2I5GD
60-69 years, female
30.4
GTEX-13CF2-0011-R8b-SM-5IJCX
60-69 years, male
30.1
GTEX-ZVZQ-0011-R8a-SM-51MR5
60-69 years, female
29.7
GTEX-T6MN-0011-R8A-SM-32QP3
50-59 years, male
29.0
GTEX-XOTO-0011-R8A-SM-4B65J
50-59 years, male
28.7
GTEX-13O3O-0011-R8b-SM-5LUAL
60-69 years, female
28.4
GTEX-11WQC-0011-R8b-SM-57WCH
60-69 years, male
28.1
GTEX-145LU-0011-R8b-SM-5PNZG
50-59 years, male
28.1
GTEX-Z93S-0011-R8a-SM-4RGNL
50-59 years, male
27.9
GTEX-145MH-0011-R8a-SM-5PNUL
50-59 years, male
27.7
GTEX-12WSM-0011-R8a-SM-5DUWJ
60-69 years, male
27.1
GTEX-WHSE-0011-R8A-SM-3P5Z1
20-29 years, male
26.7
GTEX-13OVL-0011-R8a-SM-5L3HH
50-59 years, male
26.6
GTEX-ZDXO-0011-R8a-SM-4WWD7
60-69 years, male
26.6
GTEX-QMR6-0011-R8A-SM-32PKJ
50-59 years, male
26.4
GTEX-13JVG-0011-R8a-SM-5KM3E
60-69 years, male
25.8
GTEX-13X6I-0011-R8a-SM-5PNZF
60-69 years, male
23.6
GTEX-13NYS-0011-R8a-SM-5MR5H
60-69 years, male
23.3
GTEX-ZXG5-0011-R8a-SM-57WD1
60-69 years, male
23.1
GTEX-R55E-0011-R8A-SM-2TC66
20-29 years, male
22.9
GTEX-11ZUS-0011-R8a-SM-5BC73
30-39 years, male
22.8
GTEX-13NZ8-0011-R8b-SM-5KM48
60-69 years, female
21.7
GTEX-147F4-0011-R8b-SM-5S2UN
50-59 years, male
21.7
GTEX-11ZTS-0011-R8a-SM-57WDI
60-69 years, female
21.5
GTEX-13PDP-0011-R8b-SM-5O9CS
60-69 years, male
20.8
GTEX-ZVT3-0011-R8b-SM-57WDJ
60-69 years, female
20.6
GTEX-13SLX-0011-R8b-SM-5PNWZ
50-59 years, female
19.7
GTEX-X261-0011-R8A-SM-4E3I5
50-59 years, male
18.4
GTEX-Q2AG-0011-R8A-SM-2HMK5
40-49 years, female
18.3
GTEX-N7MT-0011-R8a-SM-2I5GU
60-69 years, female
18.1
GTEX-YJ89-0011-R8b-SM-4SOK8
60-69 years, male
17.9
GTEX-13OW8-0011-R8a-SM-5L3G5
60-69 years, male
13.7
GTEX-132Q8-0011-R8b-SM-5DUWX
60-69 years, male
13.3
GTEX-131XW-0011-R8a-SM-5DUWY
50-59 years, female
13.2
GTEX-144GL-0011-R8a-SM-5Q5B1
50-59 years, male
11.8
GTEX-13X6J-0011-R8b-SM-5PNUA
50-59 years, male
11.7
GTEX-11GSP-0011-R8b-SM-5NQ79
60-69 years, female
10.8
GTEX-11WQK-0011-R8a-SM-5BC7C
50-59 years, male
10.3
GTEX-T5JC-0011-R8A-SM-32PLM
20-29 years, male
10.0
GTEX-ZF28-0011-R8a-SM-4WWFW
60-69 years, male
9.5
GTEX-XMD1-0011-R8A-SM-4AT48
60-69 years, male
8.8
GTEX-13QJC-0011-R8b-SM-5S2U6
60-69 years, female
8.5
GTEX-ZAB4-0011-R8b-SM-4SOKF
40-49 years, male
8.1
GTEX-WWYW-0011-R8A-SM-3NB3S
50-59 years, female
7.4
GTEX-1445S-0011-R8a-SM-5PNWX
60-69 years, male
6.8
GTEX-WVLH-0011-R8A-SM-3MJFC
50-59 years, male
6.6
GTEX-139TS-0011-R8a-SM-5J1NP
60-69 years, male
6.5
GTEX-13FLW-0011-R8b-SM-5J1MZ
50-59 years, male
6.5
GTEX-N7MS-0011-R8a-SM-2YUMK
60-69 years, male
6.3
GTEX-13OVJ-0011-R8b-SM-5L3FS
50-59 years, female
6.0
GTEX-11H98-0011-R8a-SM-5NQ8V
50-59 years, male
5.8
GTEX-ZUA1-0011-R8b-SM-51MST
40-49 years, male
5.6
GTEX-RVPU-0011-R8A-SM-5SI8I
50-59 years, male
4.4
GTEX-X4XY-0011-R8A-SM-46MVC
60-69 years, male
4.3
GTEX-NL3H-0011-R8a-SM-5S2VF
60-69 years, male
2.6
GTEX-12WSA-0011-R8a-SM-5P9EX
60-69 years, male
2.5
GTEX-14753-0011-R8b-SM-5S2U1
60-69 years, male
2.5
Show all
HYPOTHALAMUS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.