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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 440.9
Min RPKM: 172.7
Std RPKM: 64.3
Median RPKM: 268.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
440.9
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
426.3
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
414.4
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
412.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
412.2
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
409.2
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
402.2
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
395.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
388.9
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
384.6
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
382.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
376.5
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
365.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
360.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
354.5
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
350.0
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
349.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
345.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
332.7
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
328.8
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
328.6
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
328.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
326.0
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
320.3
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
311.7
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
307.9
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
305.7
GTEX-QCQG-1226-SM-48U23
50-59 years, female
301.9
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
300.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
299.0
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
298.2
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
293.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
292.4
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
290.9
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
289.3
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
288.8
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
288.3
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
286.4
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
285.3
GTEX-11I78-2026-SM-5987C
50-59 years, female
285.2
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
284.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
282.1
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
282.0
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
281.5
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
278.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
277.8
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
271.3
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
270.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
267.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
266.6
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
266.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
266.0
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
264.0
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
261.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
260.0
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
258.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
256.1
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
252.1
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
250.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
249.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
249.1
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
247.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
246.2
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
244.4
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
241.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
239.9
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
239.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
238.7
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
236.4
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
235.4
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
235.3
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
235.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
233.3
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
233.2
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
227.9
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
224.3
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
223.5
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
220.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
219.6
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
219.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
217.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
215.5
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
215.2
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
208.1
GTEX-S341-1226-SM-4AD5S
40-49 years, female
204.9
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
204.5
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
202.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
202.2
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
202.0
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
199.5
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
196.3
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
192.5
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
187.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
180.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
176.6
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
172.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.