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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 435.8
Min RPKM: 98.7
Std RPKM: 71.1
Median RPKM: 228.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
435.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
423.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
366.5
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
361.8
GTEX-1192X-2526-SM-59868
50-59 years, male
357.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
350.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
349.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
346.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
340.9
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
339.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
335.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
332.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
332.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
331.6
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
325.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
319.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
317.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
311.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
304.6
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
304.2
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
297.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
297.5
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
294.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
287.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
284.6
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
277.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
277.0
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
274.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
269.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
261.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
253.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
252.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
245.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
244.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
241.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
240.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
240.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
237.5
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
234.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
233.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
232.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
232.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
231.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
229.0
GTEX-13113-1226-SM-5EGHT
60-69 years, female
228.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
228.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
228.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
227.3
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
226.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
222.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
222.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
221.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
219.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
219.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
219.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
216.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
215.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
214.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
213.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
210.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
205.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
205.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
204.8
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
198.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
198.1
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
196.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
196.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
189.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
186.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
186.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
184.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
180.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
179.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
173.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
170.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
167.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
165.4
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
161.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
160.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
156.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
133.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
131.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
131.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
128.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
127.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
120.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
111.5
GTEX-111YS-1426-SM-5GID8
60-69 years, male
98.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.