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COLON - Expression summary
RNA expressioni
HPA:3.4TPM
GTEx:5.3RPKM
FANTOM5:39.8Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 3.4
overview Male, age 54 Sample 1
TPM: 3.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 1.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 7.3
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 4.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 4.8
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 1.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 4.4
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 3.8
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 2.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 5.3
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 6.6
Samples: 149

Max RPKM: 16.3
Min RPKM: 2.1
Std RPKM: 1.6
Median RPKM: 6.5
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 16.3
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 11.3
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 11.1
GTEX-Y114-1626-SM-4TT7I 50-59 years, female 10.8
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 9.9
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 9.6
GTEX-ZVT4-2626-SM-5N9GJ 50-59 years, female 9.1
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 8.7
GTEX-11DXX-1926-SM-5EGJK 60-69 years, female 8.6
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 8.6
Show all
Colon - Transverse
RPKM: 4.3
Samples: 196

Max RPKM: 13.1
Min RPKM: 0.6
Std RPKM: 2.5
Median RPKM: 3.4
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 13.1
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 12.4
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 11.0
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 10.9
GTEX-XXEK-1926-SM-4BRVD 50-59 years, male 10.9
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 10.3
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 10.1
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 9.8
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 9.5
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 9.5
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 39.8
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 43.4
FF:10014-101C5 62,83,84 years, mixed 39.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.