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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 686.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 99.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 103.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 190
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 164.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 402.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 104.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 366.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 784.5
Min RPKM: 50.4
Std RPKM: 154.4
Median RPKM: 282.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
784.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
776.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
665.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
621.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
603.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
600.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
588.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
583.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
582.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
577.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
570.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
565.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
564.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
563.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
554.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
539.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
537.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
529.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
521.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
520.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
505.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
491.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
491.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
484.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
482.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
477.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
472.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
472.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
467.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
459.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
437.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
414.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
413.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
395.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
395.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
389.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
377.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
366.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
363.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
358.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
358.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
354.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
351.5
GTEX-13113-1326-SM-5GCOI
60-69 years, female
336.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
335.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
333.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
331.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
324.0
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
323.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
322.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
319.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
317.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
310.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
307.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
299.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
298.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
298.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
292.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
283.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
282.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
281.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
281.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
279.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
275.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
270.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
267.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
267.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
262.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
262.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
261.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
259.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
253.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
252.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
251.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
249.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
238.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
235.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
233.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
233.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
232.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
232.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
228.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
224.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
221.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
213.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
212.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
211.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
211.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
206.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
203.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
202.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
201.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
195.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
194.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
193.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
186.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
184.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
182.7
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
182.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
176.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
175.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
173.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
172.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
170.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
169.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
168.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
168.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
167.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
163.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
156.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
154.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
153.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
143.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
141.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
131.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
130.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
129.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
112.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
50.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.