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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 8.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 5.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 5.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 6.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 5.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 9.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 2.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 9.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 117.1
Min RPKM: 1.8
Std RPKM: 16.6
Median RPKM: 8.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
117.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
83.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
66.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
60.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
52.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
51.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
49.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
41.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
41.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
38.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
35.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
28.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
27.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
24.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
22.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
20.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
20.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
20.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
20.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
19.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
19.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
19.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
18.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
17.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
17.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
17.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
17.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
15.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
14.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
14.6
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
14.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
14.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
14.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
14.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
13.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
13.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
12.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
12.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
12.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
11.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
11.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
10.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
10.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
10.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
10.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
10.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
10.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
10.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
9.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
9.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
9.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
9.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
9.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
8.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
8.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
8.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
8.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
8.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
8.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
8.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
7.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
7.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
7.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
7.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
7.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
7.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
7.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
6.9
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
6.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
6.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
6.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
6.7
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
6.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
6.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
6.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
6.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
6.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
6.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
6.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
6.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
5.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
5.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
5.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
5.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
5.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
5.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
5.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
5.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
5.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
5.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
5.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
5.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
5.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
5.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
5.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
5.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
4.9
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
4.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
4.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
4.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
4.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
4.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
4.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
4.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
3.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
3.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
3.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
3.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
3.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
3.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
3.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
3.4
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
3.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
2.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
2.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
2.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
2.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
1.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
