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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 38.3
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 23
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 13.2
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 57.7
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 52
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 36.5
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 16.6
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 22.4
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 26.7
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 247.4
Min RPKM: 21.3
Std RPKM: 45.4
Median RPKM: 135.8
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
247.4
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
244.4
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
230.4
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
225.9
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
225.8
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
223.2
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
222.5
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
211.2
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
201.8
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
200.6
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
199.7
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
197.3
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
195.4
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
195.3
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
194.1
GTEX-11DXZ-2126-SM-59881
50-59 years, male
193.6
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
193.6
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
193.5
GTEX-13112-0226-SM-5P9IV
50-59 years, male
193.0
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
190.6
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
190.0
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
188.9
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
187.7
GTEX-REY6-0126-SM-48FDT
60-69 years, male
184.2
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
181.1
GTEX-S95S-1126-SM-4B64E
60-69 years, male
180.1
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
180.0
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
178.9
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
178.8
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
177.4
GTEX-11OF3-1826-SM-5987N
60-69 years, male
175.1
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
174.4
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
174.1
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
173.5
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
173.3
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
170.8
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
170.5
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
170.5
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
170.0
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
169.8
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
169.4
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
169.2
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
166.6
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
165.9
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
165.1
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
164.4
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
163.5
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
163.0
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
162.9
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
161.0
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
160.9
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
160.7
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
160.0
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
159.0
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
158.7
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
158.6
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
158.5
GTEX-Y111-2426-SM-4TT23
50-59 years, male
158.5
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
158.0
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
157.1
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
155.8
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
155.6
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
155.5
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
154.6
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
153.7
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
152.8
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
150.5
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
149.9
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
149.1
GTEX-V955-1926-SM-4KL1L
60-69 years, male
148.8
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
148.6
GTEX-X261-2326-SM-4PQYU
50-59 years, male
147.6
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
144.8
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
144.7
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
144.6
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
143.2
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
142.3
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
140.9
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
139.9
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
139.1
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
136.9
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
136.9
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
136.3
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
136.2
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
136.2
GTEX-R55D-0126-SM-48FEL
50-59 years, male
136.0
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
135.6
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
135.6
GTEX-13111-1526-SM-5EGJX
50-59 years, male
133.6
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
133.6
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
133.6
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
132.2
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
131.7
GTEX-12696-0226-SM-5EGL3
60-69 years, male
131.5
GTEX-117XS-2026-SM-5GID1
60-69 years, male
128.3
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
128.3
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
127.1
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
126.4
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
125.6
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
124.8
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
122.7
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
122.2
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
121.1
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
117.7
GTEX-XPT6-1626-SM-4B655
20-29 years, male
117.4
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
116.9
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
116.7
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
116.6
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
115.8
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
114.9
GTEX-QLQW-1026-SM-447A9
30-39 years, male
114.2
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
113.2
GTEX-R55C-1426-SM-48FED
40-49 years, male
112.8
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
111.8
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
111.4
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
111.4
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
111.0
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
110.3
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
110.2
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
109.0
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
108.8
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
108.4
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
107.5
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
107.2
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
105.1
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
104.2
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
103.7
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
103.3
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
102.3
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
102.0
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
101.7
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
101.0
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
100.3
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
99.5
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
98.6
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
98.5
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
98.4
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
98.0
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
97.6
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
97.5
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
96.3
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
96.0
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
91.6
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
89.1
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
87.3
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
82.9
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
81.6
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
77.3
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
77.2
GTEX-S33H-0126-SM-4AD62
30-39 years, male
75.2
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
74.2
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
72.2
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
72.0
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
70.3
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
70.3
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
68.7
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
68.7
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
67.6
GTEX-RN64-2326-SM-48FDW
50-59 years, male
67.3
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
67.1
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
67.1
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
66.2
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
64.2
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
62.9
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
62.9
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
62.7
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
61.2
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
47.2
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
46.3
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
36.4
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
28.7
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
21.3
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.