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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1048.2
Min RPKM: 1.2
Std RPKM: 251.4
Median RPKM: 301.7
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
1048.2
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
955.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
778.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
763.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
743.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
675.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
672.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
659.4
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
630.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
630.0
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
625.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
620.6
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
612.1
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
610.1
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
609.5
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
593.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
591.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
585.6
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
585.3
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
573.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
548.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
520.4
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
520.0
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
505.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
485.6
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
479.4
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
474.5
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
471.9
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
464.6
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
450.9
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
450.5
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
432.5
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
431.2
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
413.9
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
401.6
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
395.5
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
393.3
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
384.3
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
380.1
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
363.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
363.1
GTEX-QCQG-1226-SM-48U23
50-59 years, female
351.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
348.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
347.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
329.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
328.0
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
320.3
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
308.7
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
294.7
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
281.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
273.3
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
269.9
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
268.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
267.8
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
266.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
254.6
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
244.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
224.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
193.2
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
182.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
173.2
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
171.1
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
162.5
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
139.6
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
131.0
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
124.4
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
123.6
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
118.7
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
117.4
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
111.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
97.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
93.1
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
68.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
57.4
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
17.8
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
17.2
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
11.8
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
8.2
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
8.1
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
7.1
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
6.6
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
4.9
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
4.5
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
4.2
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
3.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
3.1
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
2.8
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
2.8
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
2.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
2.4
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
2.4
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
2.1
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
2.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
1.4
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
1.3
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
1.2
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.