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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2378.6
Min RPKM: 488.7
Std RPKM: 280.2
Median RPKM: 860.4
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
2378.6
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
1694.3
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
1509.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
1502.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
1497.2
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
1460.5
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
1384.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
1364.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
1284.1
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
1279.9
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
1265.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
1255.1
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1239.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
1216.2
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
1207.1
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
1175.7
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
1173.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
1158.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
1145.1
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
1135.8
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
1111.3
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
1107.7
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
1078.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
1061.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
1056.8
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
1046.0
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
1038.6
GTEX-S341-1226-SM-4AD5S
40-49 years, female
1030.2
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
1024.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
1002.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
1002.2
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
999.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
992.0
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
990.1
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
974.6
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
971.4
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
958.6
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
954.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
954.1
GTEX-QCQG-1226-SM-48U23
50-59 years, female
951.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
944.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
940.1
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
924.9
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
924.3
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
922.8
GTEX-11I78-2026-SM-5987C
50-59 years, female
903.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
896.1
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
863.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
857.0
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
852.9
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
850.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
847.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
832.6
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
828.8
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
824.8
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
817.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
814.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
807.3
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
807.2
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
800.3
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
799.0
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
798.8
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
798.2
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
791.9
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
786.1
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
784.2
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
782.6
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
779.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
777.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
762.2
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
758.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
757.1
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
741.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
740.4
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
739.1
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
734.4
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
733.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
723.3
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
721.8
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
719.1
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
714.6
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
704.4
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
697.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
688.0
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
687.1
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
678.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
666.2
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
663.5
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
655.1
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
653.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
650.3
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
649.7
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
648.7
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
639.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
507.6
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
488.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.