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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1130.7
Min RPKM: 369.6
Std RPKM: 133.5
Median RPKM: 564.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
1130.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
913.6
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
866.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
850.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
789.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
777.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
761.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
752.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
738.7
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
734.8
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
725.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
723.7
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
719.6
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
714.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
693.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
683.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
682.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
679.3
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
663.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
647.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
646.6
GTEX-1192X-2526-SM-59868
50-59 years, male
646.1
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
643.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
641.1
GTEX-13111-1426-SM-5DUW3
50-59 years, male
639.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
628.9
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
628.3
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
628.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
615.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
609.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
602.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
597.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
592.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
589.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
587.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
585.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
584.5
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
581.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
581.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
576.3
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
576.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
575.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
575.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
573.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
554.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
552.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
550.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
550.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
549.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
547.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
546.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
545.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
545.3
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
545.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
544.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
534.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
531.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
529.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
525.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
520.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
506.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
502.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
502.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
496.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
494.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
488.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
487.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
484.2
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
463.2
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
452.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
449.7
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
447.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
444.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
444.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
443.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
439.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
437.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
431.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
417.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
416.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
389.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
388.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
382.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
382.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
374.7
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
374.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
371.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
369.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.