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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 388.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 139.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 128.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 129.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 148.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 216.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 205.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 302
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 818.9
Min RPKM: 46.5
Std RPKM: 128.3
Median RPKM: 201.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
818.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
621.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
573.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
518.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
512.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
492.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
466.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
452.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
434.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
432.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
414.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
412.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
393.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
392.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
370.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
369.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
362.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
360.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
357.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
352.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
351.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
345.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
341.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
333.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
325.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
324.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
323.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
320.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
319.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
314.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
298.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
296.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
292.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
289.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
288.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
277.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
277.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
276.9
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
274.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
270.0
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
267.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
266.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
264.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
263.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
260.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
260.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
257.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
245.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
239.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
238.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
232.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
229.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
228.2
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
227.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
219.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
216.3
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
210.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
206.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
202.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
201.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
201.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
199.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
199.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
198.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
197.2
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
193.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
191.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
190.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
190.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
188.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
188.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
188.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
181.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
180.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
179.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
177.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
170.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
166.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
162.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
159.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
156.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
154.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
154.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
151.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
150.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
150.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
149.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
148.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
146.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
146.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
138.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
136.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
136.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
131.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
129.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
124.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
123.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
122.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
121.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
120.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
120.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
119.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
118.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
116.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
109.1
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
109.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
101.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
99.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
98.6
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
94.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
94.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
90.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
89.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
88.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
81.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
80.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
77.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
73.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
46.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.