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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 133.3
Min RPKM: 56.8
Std RPKM: 15.8
Median RPKM: 88.5
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
133.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
120.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
116.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
115.6
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
115.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
114.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
114.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
113.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
109.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
108.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
108.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
107.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
107.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
106.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
104.5
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
103.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
103.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
102.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
101.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
101.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
101.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
101.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
100.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
100.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
100.2
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
99.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
99.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
99.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
99.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
98.6
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
98.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
98.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
96.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
96.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
95.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
94.0
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
93.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
93.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
91.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
90.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
89.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
88.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
88.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
88.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
88.4
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
87.0
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
86.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
86.3
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
85.9
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
84.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
84.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
81.9
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
81.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
81.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
81.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
81.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
80.9
GTEX-13113-1226-SM-5EGHT
60-69 years, female
80.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
79.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
79.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
78.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
78.1
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
77.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
76.9
GTEX-117YX-0326-SM-5GICL
50-59 years, male
76.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
75.0
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
75.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
74.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
73.5
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
73.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
72.5
GTEX-1192X-2526-SM-59868
50-59 years, male
72.4
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
72.2
GTEX-ZTSS-0926-SM-59865
40-49 years, male
72.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
71.7
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
71.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
70.3
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
70.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
70.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
69.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
68.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
67.3
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
67.0
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
66.7
GTEX-111YS-1426-SM-5GID8
60-69 years, male
65.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
65.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
63.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
56.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.