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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 153.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 56.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 71.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 73.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 104.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 162.6
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 94.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 97
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 610.3
Min RPKM: 31.8
Std RPKM: 88.1
Median RPKM: 106.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
610.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
556.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
483.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
271.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
264.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
254.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
240.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
238.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
236.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
227.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
225.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
223.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
200.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
199.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
195.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
192.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
188.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
186.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
185.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
183.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
180.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
180.0
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
177.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
170.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
168.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
167.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
164.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
164.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
159.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
159.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
155.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
155.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
154.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
153.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
152.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
151.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
149.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
148.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
147.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
144.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
143.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
142.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
141.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
139.0
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
136.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
136.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
132.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
131.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
124.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
119.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
119.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
118.6
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
117.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
116.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
114.4
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
113.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
110.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
110.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
106.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
106.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
105.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
104.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
104.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
103.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
103.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
103.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
101.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
100.0
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
98.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
96.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
96.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
96.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
95.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
94.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
92.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
89.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
89.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
85.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
85.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
83.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
83.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
83.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
82.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
81.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
81.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
80.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
79.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
78.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
78.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
77.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
72.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
71.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
70.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
69.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
69.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
66.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
65.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
65.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
61.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
61.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
60.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
60.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
58.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
58.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
57.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
56.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
53.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
51.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
51.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
50.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
47.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
46.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
41.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
40.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
39.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
35.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
35.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
32.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
31.8
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.