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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1061.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1584.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 796.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1595.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1632.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 748
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1495.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1779.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 907.6
Min RPKM: 111.2
Std RPKM: 159.9
Median RPKM: 371.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
907.6
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
845.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
791.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
749.6
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
741.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
731.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
715.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
702.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
696.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
675.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
673.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
648.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
646.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
633.0
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
626.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
620.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
613.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
589.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
566.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
558.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
555.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
552.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
547.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
532.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
532.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
531.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
528.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
517.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
508.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
502.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
495.3
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
479.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
473.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
472.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
464.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
461.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
457.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
454.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
443.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
433.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
432.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
431.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
424.9
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
421.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
416.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
416.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
414.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
406.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
404.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
404.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
401.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
395.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
394.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
391.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
390.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
389.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
387.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
381.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
372.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
371.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
369.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
362.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
355.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
350.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
350.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
346.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
345.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
341.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
340.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
338.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
337.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
337.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
329.7
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
329.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
328.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
322.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
320.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
320.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
320.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
316.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
315.7
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
314.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
313.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
313.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
309.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
306.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
298.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
296.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
294.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
289.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
287.7
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
285.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
282.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
278.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
273.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
268.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
266.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
266.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
260.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
257.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
252.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
252.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
252.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
246.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
246.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
240.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
238.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
234.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
229.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
226.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
220.9
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
207.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
200.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
196.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
193.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
191.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
188.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
123.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
111.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.