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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 90
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 22
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 29.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 53.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 50.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 93.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 66.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 89.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 169.6
Min RPKM: 44.2
Std RPKM: 25.5
Median RPKM: 104.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
169.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
154.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
151.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
149.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
145.3
GTEX-RN64-1826-SM-48FDV
50-59 years, male
144.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
142.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
141.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
141.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
140.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
139.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
138.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
137.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
136.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
132.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
131.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
128.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
127.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
126.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
126.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
125.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
125.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
123.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
122.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
122.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
121.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
121.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
120.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
120.7
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
120.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
120.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
119.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
119.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
118.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
117.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
117.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
117.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
117.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
117.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
117.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
115.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
115.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
114.8
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
114.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
113.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
112.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
112.3
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
111.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
110.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
110.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
110.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
108.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
108.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
107.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
106.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
106.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
106.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
104.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
104.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
104.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
104.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
104.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
103.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
102.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
99.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
97.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
97.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
95.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
95.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
95.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
95.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
94.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
93.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
92.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
91.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
91.7
GTEX-QEL4-1226-SM-447A4
50-59 years, male
90.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
90.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
90.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
90.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
89.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
89.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
88.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
88.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
88.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
88.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
87.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
87.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
86.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
85.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
84.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
83.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
81.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
80.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
78.6
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
77.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
77.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
76.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
76.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
73.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
73.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
72.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
70.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
69.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
68.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
67.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
67.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
66.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
65.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
63.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
63.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
62.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
62.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
61.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
61.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
55.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
54.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
53.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
44.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.