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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 337.3
Min RPKM: 1.1
Std RPKM: 81.9
Median RPKM: 101.0
GTEX-ZTSS-0926-SM-59865
40-49 years, male
337.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
302.0
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
256.6
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
247.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
246.3
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
241.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
240.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
237.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
234.4
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
229.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
229.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
228.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
226.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
222.0
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
219.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
213.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
208.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
202.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
193.5
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
189.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
187.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
183.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
176.6
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
173.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
165.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
164.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
161.7
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
161.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
157.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
157.6
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
156.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
153.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
150.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
150.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
150.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
148.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
134.2
GTEX-13113-1226-SM-5EGHT
60-69 years, female
133.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
133.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
131.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
131.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
125.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
122.9
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
101.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
101.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
100.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
97.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
94.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
93.5
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
91.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
86.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
86.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
86.6
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
85.9
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
84.4
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
83.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
80.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
80.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
77.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
74.8
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
73.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
72.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
61.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
59.3
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
53.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
51.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
48.3
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
46.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
38.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
37.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
36.2
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
35.6
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
31.5
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
22.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
22.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
20.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
15.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
7.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
7.7
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
7.5
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
6.7
GTEX-13111-1426-SM-5DUW3
50-59 years, male
5.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
3.8
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
3.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
3.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
2.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
2.3
GTEX-1192X-2526-SM-59868
50-59 years, male
1.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.