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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 75.9
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 56.3
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 24.3
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 108.8
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 108.1
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 62.6
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 5.6
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 20.7
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 12.2
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 228.2
Min RPKM: 22.6
Std RPKM: 42.1
Median RPKM: 112.8
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
228.2
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
203.9
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
201.0
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
197.5
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
197.0
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
192.6
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
190.5
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
190.2
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
187.3
GTEX-13112-0226-SM-5P9IV
50-59 years, male
187.0
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
180.2
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
179.9
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
179.4
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
172.9
GTEX-Y111-2426-SM-4TT23
50-59 years, male
171.5
GTEX-S95S-1126-SM-4B64E
60-69 years, male
171.0
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
170.4
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
164.7
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
163.5
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
161.8
GTEX-11DXZ-2126-SM-59881
50-59 years, male
161.6
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
160.6
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
160.6
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
160.0
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
159.6
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
158.7
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
157.7
GTEX-REY6-0126-SM-48FDT
60-69 years, male
155.0
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
155.0
GTEX-12696-0226-SM-5EGL3
60-69 years, male
153.5
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
152.8
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
152.0
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
149.9
GTEX-11OF3-1826-SM-5987N
60-69 years, male
149.3
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
148.5
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
146.2
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
146.0
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
145.6
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
145.5
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
144.7
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
144.6
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
142.2
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
142.1
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
141.4
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
141.3
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
141.2
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
140.5
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
139.8
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
138.6
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
137.2
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
136.3
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
135.8
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
134.8
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
132.3
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
132.2
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
132.1
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
132.0
GTEX-13111-1526-SM-5EGJX
50-59 years, male
130.6
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
129.4
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
129.2
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
128.7
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
128.6
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
128.3
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
128.2
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
127.1
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
126.4
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
126.1
GTEX-V955-1926-SM-4KL1L
60-69 years, male
125.6
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
125.6
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
124.8
GTEX-117XS-2026-SM-5GID1
60-69 years, male
124.0
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
123.8
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
123.2
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
122.4
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
121.7
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
121.4
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
121.1
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
120.6
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
118.7
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
117.4
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
116.9
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
116.7
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
116.2
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
115.9
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
114.2
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
113.0
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
112.7
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
112.2
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
112.1
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
111.6
GTEX-QLQW-1026-SM-447A9
30-39 years, male
111.6
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
110.5
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
110.1
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
109.5
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
109.4
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
108.1
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
107.5
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
106.7
GTEX-R55D-0126-SM-48FEL
50-59 years, male
106.6
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
106.6
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
106.5
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
106.1
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
106.1
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
106.0
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
105.9
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
105.4
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
104.3
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
103.5
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
102.8
GTEX-R55C-1426-SM-48FED
40-49 years, male
102.3
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
101.4
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
100.3
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
100.2
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
100.1
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
97.8
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
97.7
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
97.2
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
95.9
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
93.9
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
93.4
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
93.3
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
93.2
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
92.9
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
90.4
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
89.5
GTEX-XPT6-1626-SM-4B655
20-29 years, male
89.3
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
89.1
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
87.9
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
87.8
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
83.5
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
79.6
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
77.9
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
76.4
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
76.3
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
75.7
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
73.8
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
73.4
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
71.6
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
70.9
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
70.6
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
70.4
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
69.6
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
66.9
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
64.1
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
63.9
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
63.6
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
63.5
GTEX-X261-2326-SM-4PQYU
50-59 years, male
63.5
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
62.3
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
62.3
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
61.7
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
61.0
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
60.1
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
59.8
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
58.5
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
56.5
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
56.0
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
55.8
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
54.8
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
53.6
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
49.6
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
46.7
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
45.8
GTEX-S33H-0126-SM-4AD62
30-39 years, male
40.1
GTEX-RN64-2326-SM-48FDW
50-59 years, male
38.5
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
36.6
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
35.4
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
31.1
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
28.9
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
27.8
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
22.6
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
22.6
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.