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COLON - Expression summary
RNA expressioni
HPA:15.1TPM
GTEx:16.2RPKM
FANTOM5:28.0Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 15.1
overview Male, age 54 Sample 1
TPM: 16.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 15.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 8.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 21.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 14.2
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 17.3
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 16.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 15.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 19.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 21.3
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 15.7
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 16.2
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 17.2
Samples: 149

Max RPKM: 28.2
Min RPKM: 7.2
Std RPKM: 3.0
Median RPKM: 16.9
GTEX-XUW1-1826-SM-4BOQD 50-59 years, female 28.2
GTEX-ZPU1-1726-SM-4WWFV 40-49 years, male 26.8
GTEX-14E6C-2226-SM-5QGQG 40-49 years, male 24.0
GTEX-117YX-0526-SM-5EGJH 50-59 years, male 23.5
GTEX-131XG-1526-SM-5GCNQ 50-59 years, female 23.3
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 23.2
GTEX-145ME-1126-SM-5SIAT 40-49 years, female 22.4
GTEX-13FTW-2126-SM-5K7YG 40-49 years, male 22.2
GTEX-Z93S-2626-SM-57WBX 50-59 years, male 22.2
GTEX-WHPG-1626-SM-4M1ZL 50-59 years, male 21.7
Show all
Colon - Transverse
RPKM: 15.5
Samples: 196

Max RPKM: 23.7
Min RPKM: 7.8
Std RPKM: 2.6
Median RPKM: 15.3
GTEX-RWS6-1826-SM-47JXX 60-69 years, female 23.7
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 23.5
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 23.2
GTEX-12WSL-1626-SM-5GCMU 50-59 years, male 22.7
GTEX-13U4I-2426-SM-5LU34 40-49 years, female 22.3
GTEX-U3ZH-1326-SM-4DXSF 30-39 years, male 22.2
GTEX-Y114-1526-SM-4TT79 50-59 years, female 22.2
GTEX-S341-1426-SM-4AD6U 40-49 years, female 22.1
GTEX-11P81-1126-SM-5GU5G 30-39 years, female 21.8
GTEX-T6MO-0826-SM-4DM51 40-49 years, female 21.2
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 28.0
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 26.7
FF:10014-101C5 62,83,84 years, mixed 28.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.