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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 171.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 170.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 123.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 234.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 178.4
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 154.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 181.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 226
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 211.2
Min RPKM: 30.1
Std RPKM: 27.3
Median RPKM: 130.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
211.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
207.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
186.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
185.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
176.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
173.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
172.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
170.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
168.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
166.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
166.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
165.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
164.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
163.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
161.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
161.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
159.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
157.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
157.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
155.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
151.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
150.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
149.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
148.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
148.4
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
147.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
147.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
147.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
146.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
146.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
146.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
145.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
144.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
143.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
141.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
141.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
140.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
140.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
140.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
140.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
139.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
139.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
139.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
139.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
139.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
138.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
136.7
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
136.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
136.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
136.0
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
135.6
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
134.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
133.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
133.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
133.0
GTEX-YECK-1926-SM-4W21H
60-69 years, male
132.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
132.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
131.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
130.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
130.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
129.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
129.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
128.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
128.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
128.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
126.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
125.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
125.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
124.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
124.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
124.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
123.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
123.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
123.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
121.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
121.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
121.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
120.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
118.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
118.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
118.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
118.1
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
116.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
116.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
116.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
116.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
116.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
115.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
114.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
113.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
113.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
113.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
113.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
113.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
113.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
112.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
111.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
110.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
109.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
109.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
107.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
106.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
104.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
104.1
GTEX-11ZUS-2526-SM-59872
30-39 years, male
102.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
102.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
102.2
GTEX-13113-1326-SM-5GCOI
60-69 years, female
100.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
99.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
94.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
93.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
93.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
93.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
89.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
76.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
68.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
68.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
66.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
30.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.