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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 522.0
Min RPKM: 50.6
Std RPKM: 74.2
Median RPKM: 166.6
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
522.0
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
378.5
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
374.8
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
355.3
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
348.2
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
316.6
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
299.1
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
290.2
GTEX-QCQG-1226-SM-48U23
50-59 years, female
283.7
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
283.3
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
270.6
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
267.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
259.9
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
254.2
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
253.8
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
249.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
239.0
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
236.7
GTEX-S341-1226-SM-4AD5S
40-49 years, female
227.6
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
225.9
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
222.9
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
215.4
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
213.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
210.1
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
207.5
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
203.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
200.4
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
196.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
196.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
195.3
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
192.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
191.0
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
190.0
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
188.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
187.0
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
186.2
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
183.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
183.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
181.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
180.4
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
179.8
GTEX-11I78-2026-SM-5987C
50-59 years, female
178.8
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
177.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
176.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
171.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
170.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
169.5
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
168.1
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
165.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
161.0
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
160.4
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
158.6
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
158.4
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
158.2
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
156.0
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
153.6
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
152.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
150.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
150.1
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
149.6
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
148.2
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
146.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
144.9
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
143.8
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
143.1
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
141.8
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
140.9
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
140.1
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
136.8
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
135.5
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
132.7
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
132.3
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
131.8
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
131.1
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
129.0
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
127.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
126.5
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
125.6
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
123.4
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
122.9
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
120.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
117.6
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
115.0
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
111.0
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
110.8
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
109.5
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
107.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
105.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
100.5
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
100.0
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
99.1
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
95.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
91.6
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
90.2
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
88.7
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
50.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.