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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 485.4
Min RPKM: 62.3
Std RPKM: 76.9
Median RPKM: 155.8
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
485.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
393.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
378.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
363.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
334.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
314.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
314.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
279.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
275.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
266.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
259.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
257.5
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
256.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
250.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
250.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
237.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
226.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
222.4
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
221.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
216.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
210.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
210.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
206.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
202.8
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
196.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
195.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
190.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
186.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
186.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
184.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
182.8
GTEX-1122O-1326-SM-5H11F
60-69 years, female
180.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
179.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
177.1
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
177.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
173.1
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
170.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
166.3
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
165.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
163.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
162.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
159.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
157.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
156.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
155.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
154.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
153.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
150.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
149.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
146.7
GTEX-13O61-1326-SM-5KM31
60-69 years, male
145.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
145.5
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
143.9
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
143.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
142.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
141.0
GTEX-1192X-2526-SM-59868
50-59 years, male
139.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
139.0
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
137.1
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
136.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
134.7
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
133.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
132.3
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
131.9
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
131.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
131.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
130.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
121.4
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
117.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
115.9
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
114.4
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
112.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
112.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
112.4
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
109.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
108.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
106.0
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
105.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
102.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
101.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
93.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
88.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
86.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
83.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
76.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
74.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
71.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
62.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.