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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 584.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 285.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 248.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 373.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 392.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 248.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 290.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 501.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 782.8
Min RPKM: 23.9
Std RPKM: 179.7
Median RPKM: 238.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
782.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
748.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
676.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
658.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
644.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
580.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
575.1
GTEX-Q734-0326-SM-48U15
40-49 years, female
560.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
556.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
552.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
550.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
543.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
542.3
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
536.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
535.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
535.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
531.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
530.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
503.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
499.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
498.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
495.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
489.8
GTEX-S32W-1926-SM-4AD63
50-59 years, female
481.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
458.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
449.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
416.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
413.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
408.5
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
408.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
405.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
383.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
361.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
348.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
344.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
336.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
333.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
325.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
324.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
319.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
314.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
309.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
305.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
305.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
303.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
296.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
290.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
287.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
284.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
281.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
280.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
280.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
264.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
262.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
259.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
257.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
253.8
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
250.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
241.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
238.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
233.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
228.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
224.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
217.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
216.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
215.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
214.2
GTEX-1399T-0826-SM-5IFES
60-69 years, male
192.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
188.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
184.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
174.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
174.3
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
168.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
167.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
165.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
165.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
165.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
152.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
151.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
150.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
148.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
147.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
141.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
137.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
137.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
135.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
124.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
124.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
121.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
119.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
117.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
115.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
113.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
111.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
110.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
105.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
105.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
102.8
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
99.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
98.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
97.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
94.6
GTEX-11GSP-0626-SM-5986T
60-69 years, female
91.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
84.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
83.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
80.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
76.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
76.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
75.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
74.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
73.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
70.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
67.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
61.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
60.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
59.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
58.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
43.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
23.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.