We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 114.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 67.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 47.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 101.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 91.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 116.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 65.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 159.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 198.6
Min RPKM: 47.1
Std RPKM: 25.3
Median RPKM: 120.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
198.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
192.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
187.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
182.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
174.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
172.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
168.6
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
167.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
164.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
161.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
161.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
160.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
159.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
157.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
156.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
156.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
150.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
150.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
149.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
147.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
143.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
143.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
141.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
141.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
139.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
139.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
139.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
139.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
138.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
138.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
137.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
136.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
135.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
135.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
134.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
133.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
133.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
133.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
132.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
131.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
130.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
129.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
128.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
128.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
127.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
127.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
126.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
126.6
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
125.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
125.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
125.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
124.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
124.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
124.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
122.8
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
121.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
121.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
121.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
121.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
120.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
120.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
118.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
118.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
118.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
118.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
118.2
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
117.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
116.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
115.8
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
115.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
114.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
113.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
113.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
112.9
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
112.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
111.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
111.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
111.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
111.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
111.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
110.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
110.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
110.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
110.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
110.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
109.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
108.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
108.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
107.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
107.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
105.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
105.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
104.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
104.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
104.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
103.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
102.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
101.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
101.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
101.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
100.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
99.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
98.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
97.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
96.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
96.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
96.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
95.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
95.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
94.9
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
94.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
93.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
90.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
87.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
86.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
80.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
80.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
75.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
47.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.