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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1162.4
Min RPKM: 189.4
Std RPKM: 197.5
Median RPKM: 442.9
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1162.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
980.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
940.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
875.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
874.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
826.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
819.7
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
812.5
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
795.1
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
785.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
780.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
765.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
706.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
691.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
685.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
682.2
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
679.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
667.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
666.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
617.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
608.9
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
608.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
605.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
570.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
547.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
546.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
535.8
GTEX-13113-1226-SM-5EGHT
60-69 years, female
531.3
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
528.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
527.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
509.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
506.0
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
490.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
489.8
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
484.9
GTEX-1192X-2526-SM-59868
50-59 years, male
481.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
474.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
471.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
468.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
463.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
462.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
458.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
457.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
445.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
440.0
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
439.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
435.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
431.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
420.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
411.6
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
406.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
400.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
391.8
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
391.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
386.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
384.9
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
381.6
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
380.7
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
374.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
370.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
368.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
368.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
367.0
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
366.9
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
364.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
356.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
351.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
344.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
344.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
344.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
343.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
334.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
329.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
319.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
294.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
288.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
285.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
284.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
277.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
247.3
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
246.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
244.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
243.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
241.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
228.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
226.8
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
196.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
189.4
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.