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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 9.1
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 10.7
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 9
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 8.7
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 11.4
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 7
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 15.6
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 9.9
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 9.1
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 7.9
Min RPKM: 1.0
Std RPKM: 1.1
Median RPKM: 3.0
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
7.9
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
6.2
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
6.0
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
6.0
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
5.7
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
5.6
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
5.4
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
5.4
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
5.3
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
5.3
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
5.3
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
5.1
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
4.9
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
4.9
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
4.9
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
4.8
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
4.7
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
4.6
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
4.5
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
4.5
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
4.4
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
4.4
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
4.4
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
4.3
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
4.3
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
4.3
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
4.3
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
4.3
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
4.2
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
4.2
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
4.2
GTEX-S33H-0126-SM-4AD62
30-39 years, male
4.1
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
4.1
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
4.1
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
4.0
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
4.0
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
4.0
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
4.0
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
3.9
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
3.9
GTEX-XPT6-1626-SM-4B655
20-29 years, male
3.9
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
3.9
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
3.8
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
3.8
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
3.8
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
3.8
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
3.7
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
3.7
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
3.7
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
3.6
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
3.6
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
3.6
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
3.6
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
3.5
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
3.5
GTEX-R55C-1426-SM-48FED
40-49 years, male
3.5
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
3.5
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
3.5
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
3.4
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
3.4
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
3.4
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
3.4
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
3.3
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
3.3
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
3.3
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
3.3
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
3.3
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
3.2
GTEX-11DXZ-2126-SM-59881
50-59 years, male
3.2
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
3.2
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
3.2
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
3.2
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
3.2
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
3.2
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
3.2
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
3.2
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
3.2
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
3.1
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
3.1
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
3.1
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
3.0
GTEX-13111-1526-SM-5EGJX
50-59 years, male
3.0
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
3.0
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
3.0
GTEX-QLQW-1026-SM-447A9
30-39 years, male
3.0
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
3.0
GTEX-S95S-1126-SM-4B64E
60-69 years, male
3.0
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
3.0
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
2.9
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
2.9
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
2.9
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
2.9
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
2.9
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
2.9
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
2.9
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
2.9
GTEX-REY6-0126-SM-48FDT
60-69 years, male
2.9
GTEX-RN64-2326-SM-48FDW
50-59 years, male
2.9
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
2.9
GTEX-Y111-2426-SM-4TT23
50-59 years, male
2.9
GTEX-13112-0226-SM-5P9IV
50-59 years, male
2.8
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
2.8
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
2.8
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
2.8
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
2.8
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
2.8
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
2.8
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
2.8
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
2.7
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
2.7
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
2.7
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
2.7
GTEX-117XS-2026-SM-5GID1
60-69 years, male
2.6
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
2.6
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
2.6
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
2.6
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
2.5
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
2.5
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
2.5
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
2.5
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
2.5
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
2.5
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
2.5
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
2.4
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
2.3
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
2.3
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
2.3
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
2.2
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
2.2
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
2.2
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
2.1
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
2.1
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
2.1
GTEX-V955-1926-SM-4KL1L
60-69 years, male
2.1
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
2.1
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
2.0
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
2.0
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
2.0
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
2.0
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
2.0
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
1.9
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
1.9
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
1.9
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
1.9
GTEX-12696-0226-SM-5EGL3
60-69 years, male
1.8
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
1.8
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
1.8
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
1.8
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
1.8
GTEX-R55D-0126-SM-48FEL
50-59 years, male
1.8
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
1.8
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
1.8
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
1.7
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
1.7
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
1.6
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
1.6
GTEX-11OF3-1826-SM-5987N
60-69 years, male
1.6
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
1.6
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
1.6
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
1.6
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
1.5
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
1.5
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
1.5
GTEX-X261-2326-SM-4PQYU
50-59 years, male
1.5
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
1.5
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
1.4
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
1.4
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
1.3
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
1.1
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
1.1
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
1.0
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
1.0
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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