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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 116.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 36.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 105.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 127.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 99.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 88.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 80.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 39.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 764.5
Min RPKM: 3.1
Std RPKM: 141.7
Median RPKM: 132.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
764.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
729.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
717.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
592.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
483.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
454.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
410.2
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
410.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
381.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
354.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
332.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
322.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
296.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
293.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
279.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
267.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
256.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
254.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
252.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
240.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
240.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
239.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
232.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
232.3
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
229.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
227.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
223.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
217.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
217.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
200.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
198.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
196.0
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
189.1
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
182.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
179.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
177.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
175.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
174.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
166.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
166.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
164.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
161.1
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
160.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
160.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
156.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
156.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
152.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
151.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
148.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
148.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
146.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
146.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
146.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
145.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
143.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
141.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
136.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
136.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
133.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
132.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
132.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
132.3
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
129.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
127.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
124.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
119.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
119.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
117.9
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
116.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
116.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
116.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
114.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
113.9
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
111.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
111.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
110.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
110.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
109.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
108.0
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
105.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
101.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
99.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
96.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
90.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
90.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
87.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
82.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
81.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
77.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
75.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
73.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
72.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
67.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
57.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
53.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
50.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
47.2
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
43.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
39.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
33.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
31.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
31.4
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
31.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
23.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
23.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
22.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
19.0
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
18.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
16.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
16.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
14.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
14.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
13.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
13.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
7.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
7.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
6.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
5.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
3.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.