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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3461.2
Min RPKM: 1.8
Std RPKM: 609.2
Median RPKM: 317.8
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
3461.2
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
2608.2
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
1911.5
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
1875.2
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
1836.9
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
1742.8
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
1698.3
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
1522.5
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
1423.4
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
1387.6
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
1365.4
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
1217.1
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
1132.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
1108.0
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
1102.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
1029.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
1026.0
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
953.3
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
950.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
931.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
878.4
GTEX-QCQG-1226-SM-48U23
50-59 years, female
819.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
798.9
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
781.7
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
740.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
698.8
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
653.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
650.2
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
637.9
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
637.3
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
632.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
617.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
598.7
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
585.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
582.6
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
540.3
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
524.6
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
514.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
505.4
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
502.8
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
493.2
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
477.2
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
474.5
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
467.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
377.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
358.2
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
337.1
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
323.3
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
312.3
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
299.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
285.9
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
281.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
262.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
260.6
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
259.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
258.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
246.7
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
244.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
236.6
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
216.4
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
213.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
210.2
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
204.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
179.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
167.4
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
156.3
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
152.0
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
150.2
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
149.3
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
141.9
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
134.8
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
132.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
129.5
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
128.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
124.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
121.5
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
111.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
75.1
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
64.1
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
58.0
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
56.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
51.2
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
35.4
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
25.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
20.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
17.3
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
15.5
GTEX-11I78-2026-SM-5987C
50-59 years, female
13.2
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
12.3
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
10.3
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
8.0
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
6.1
GTEX-S341-1226-SM-4AD5S
40-49 years, female
3.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
3.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
2.7
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
1.8
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.