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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 319
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 131.7
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 171.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 256.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 212.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 360.7
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 312.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 369.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 611.5
Min RPKM: 15.2
Std RPKM: 117.2
Median RPKM: 220.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
611.5
GTEX-R53T-0326-SM-48FEC
50-59 years, female
533.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
503.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
467.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
414.3
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
402.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
399.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
389.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
380.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
374.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
358.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
356.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
351.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
349.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
347.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
344.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
335.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
333.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
333.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
332.2
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
327.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
325.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
325.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
322.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
320.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
320.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
316.9
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
315.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
307.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
305.0
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
304.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
302.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
297.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
294.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
294.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
292.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
288.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
285.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
282.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
279.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
278.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
276.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
270.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
268.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
268.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
263.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
260.7
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
253.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
247.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
245.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
244.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
237.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
237.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
235.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
234.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
230.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
228.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
227.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
224.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
220.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
217.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
214.3
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
214.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
206.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
204.4
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
203.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
199.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
198.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
197.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
192.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
190.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
185.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
184.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
181.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
175.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
172.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
169.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
167.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
160.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
159.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
156.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
154.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
154.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
150.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
146.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
142.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
141.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
139.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
133.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
132.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
129.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
125.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
118.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
117.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
106.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
104.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
97.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
90.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
90.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
88.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
84.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
84.8
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
80.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
77.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
73.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
72.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
62.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
55.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
53.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
51.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
50.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
47.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
44.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
44.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
41.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
40.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
37.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
28.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
15.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.