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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 702.7
Min RPKM: 270.6
Std RPKM: 82.9
Median RPKM: 429.7
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
702.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
662.0
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
625.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
607.6
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
606.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
604.9
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
583.5
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
570.1
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
564.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
559.9
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
551.1
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
540.1
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
531.5
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
528.2
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
522.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
514.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
509.0
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
505.9
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
501.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
498.4
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
495.3
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
491.2
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
488.8
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
485.2
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
482.0
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
474.8
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
469.5
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
466.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
460.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
458.2
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
457.9
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
455.8
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
450.2
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
447.0
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
446.7
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
446.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
446.5
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
446.4
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
442.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
440.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
439.9
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
434.4
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
434.2
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
434.0
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
433.4
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
431.0
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
431.0
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
429.9
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
429.5
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
428.9
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
427.6
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
420.9
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
420.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
419.8
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
419.5
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
411.1
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
407.9
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
401.9
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
401.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
401.3
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
400.0
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
396.9
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
396.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
390.8
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
390.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
389.1
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
386.7
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
383.6
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
382.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
381.1
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
374.4
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
374.4
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
374.2
GTEX-11I78-2026-SM-5987C
50-59 years, female
370.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
370.5
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
368.4
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
364.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
361.1
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
357.7
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
357.3
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
355.3
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
354.9
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
352.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
351.0
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
347.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
343.5
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
342.8
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
341.0
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
339.5
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
336.6
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
335.9
GTEX-QCQG-1226-SM-48U23
50-59 years, female
334.7
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
330.0
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
312.9
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
293.5
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
270.6
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.