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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 684.4
Min RPKM: 63.5
Std RPKM: 106.9
Median RPKM: 244.2
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
684.4
GTEX-1192X-2526-SM-59868
50-59 years, male
505.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
447.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
434.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
413.6
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
405.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
403.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
390.8
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
385.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
385.6
GTEX-117YX-0326-SM-5GICL
50-59 years, male
383.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
383.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
378.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
373.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
372.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
358.6
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
351.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
349.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
347.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
346.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
345.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
345.0
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
338.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
326.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
326.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
326.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
324.0
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
314.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
310.1
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
309.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
297.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
296.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
291.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
288.4
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
285.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
282.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
281.6
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
276.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
266.7
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
265.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
261.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
251.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
247.0
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
244.9
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
243.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
242.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
239.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
237.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
237.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
232.8
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
229.9
GTEX-13113-1226-SM-5EGHT
60-69 years, female
224.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
219.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
215.5
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
214.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
213.3
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
209.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
201.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
192.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
190.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
188.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
185.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
184.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
182.0
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
178.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
177.6
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
176.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
175.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
174.3
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
165.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
156.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
152.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
148.8
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
146.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
142.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
141.3
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
140.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
138.8
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
133.8
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
130.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
127.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
121.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
113.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
111.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
106.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
103.5
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
100.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
63.5
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.