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COLON - Expression summary
RNA expressioni
HPA:21.3TPM
GTEx:10.5RPKM
FANTOM5:58.5Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 21.3
overview Male, age 54 Sample 1
TPM: 38.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 26.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 16
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 17.6
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 12.4
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 12.1
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 22.7
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 24.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 21.6
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 23
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 26.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 25
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 11.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 10.5
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 9.1
Samples: 149

Max RPKM: 27.4
Min RPKM: 3.4
Std RPKM: 4.1
Median RPKM: 8.0
GTEX-YJ8O-1426-SM-5PNV9 40-49 years, female 27.4
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 25.0
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 21.3
GTEX-11DXY-2026-SM-5N9CZ 60-69 years, male 20.7
GTEX-145MH-2726-SM-5QGQ6 50-59 years, male 18.4
GTEX-131YS-2926-SM-5EGKI 60-69 years, female 18.2
GTEX-12ZZY-2726-SM-5EQ45 60-69 years, male 17.9
GTEX-117XS-2226-SM-5GIE1 60-69 years, male 17.5
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 17.5
GTEX-13G51-2126-SM-5IJD9 60-69 years, male 16.7
Show all
Colon - Transverse
RPKM: 11.6
Samples: 196

Max RPKM: 31.8
Min RPKM: 3.9
Std RPKM: 4.6
Median RPKM: 11.1
GTEX-X5EB-0926-SM-46MVT 40-49 years, male 31.8
GTEX-139TS-1926-SM-5IJFO 60-69 years, male 25.4
GTEX-R53T-1326-SM-48FCQ 50-59 years, female 25.2
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 24.3
GTEX-13OW6-2126-SM-5N9GL 50-59 years, male 23.9
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 22.0
GTEX-1128S-1626-SM-5H12O 60-69 years, female 21.2
GTEX-Y9LG-1526-SM-4WWDR 30-39 years, male 21.1
GTEX-WHWD-1226-SM-4OOS1 50-59 years, male 19.9
GTEX-133LE-1526-SM-5IFEN 20-29 years, female 19.7
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 58.5
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 72.2
FF:10014-101C5 62,83,84 years, mixed 58.5

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.