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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 148.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 99.1
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 81.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 163.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 160.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 203.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 154
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 146.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 414.2
Min RPKM: 76.5
Std RPKM: 78.0
Median RPKM: 211.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
414.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
409.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
403.4
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
390.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
384.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
379.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
373.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
369.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
362.5
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
345.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
337.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
329.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
329.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
326.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
323.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
321.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
319.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
311.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
309.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
308.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
306.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
305.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
297.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
297.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
284.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
284.3
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
273.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
273.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
272.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
266.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
264.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
262.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
258.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
257.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
252.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
251.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
248.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
248.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
245.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
245.6
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
238.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
235.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
232.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
232.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
231.7
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
230.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
229.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
226.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
226.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
225.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
222.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
220.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
220.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
220.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
219.1
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
217.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
217.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
214.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
212.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
211.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
207.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
202.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
202.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
201.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
200.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
198.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
197.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
195.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
194.7
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
193.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
190.4
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
190.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
189.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
187.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
183.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
178.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
178.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
177.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
174.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
170.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
170.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
170.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
169.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
168.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
168.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
168.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
167.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
166.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
165.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
164.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
163.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
162.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
157.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
153.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
152.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
151.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
151.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
149.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
149.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
148.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
147.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
143.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
143.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
131.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
130.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
130.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
130.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
124.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
120.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
118.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
115.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
115.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
107.9
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
107.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
106.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
101.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
101.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
100.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
76.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.