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COLON - Expression summary
RNA expressioni
HPA:43.0TPM
GTEx:28.2RPKM
FANTOM5:99.6Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 43.0
overview Male, age 54 Sample 1
TPM: 51.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 52.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 99.9
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 81.3
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 30.7
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.5
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 26.3
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 36.8
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 22.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 32.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 29.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 38.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 34.6
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 28.2
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 14.8
Samples: 149

Max RPKM: 26.2
Min RPKM: 6.9
Std RPKM: 3.4
Median RPKM: 14.5
GTEX-V955-1726-SM-4JBHF 60-69 years, male 26.2
GTEX-13O1R-2426-SM-5KLZZ 60-69 years, male 26.0
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 24.0
GTEX-ZF28-2526-SM-57WFH 60-69 years, male 22.7
GTEX-146FH-2426-SM-5Q5EW 50-59 years, female 22.1
GTEX-XBED-1726-SM-47JYO 60-69 years, male 21.2
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 20.5
GTEX-ZV6S-1126-SM-57WE9 40-49 years, female 20.4
GTEX-12696-1926-SM-5EGJT 60-69 years, male 20.0
GTEX-12WSL-1826-SM-5LZW9 50-59 years, male 20.0
Show all
Colon - Transverse
RPKM: 38.4
Samples: 196

Max RPKM: 75.4
Min RPKM: 7.1
Std RPKM: 19.1
Median RPKM: 43.7
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 75.4
GTEX-1122O-1526-SM-5N9CL 60-69 years, female 74.3
GTEX-XUJ4-2026-SM-4BOOW 60-69 years, female 71.8
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 71.3
GTEX-UJHI-1126-SM-4IHLN 50-59 years, female 70.4
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 68.2
GTEX-T5JW-1126-SM-4DM5V 20-29 years, female 67.5
GTEX-TML8-1326-SM-4DXTO 40-49 years, female 67.3
GTEX-XUZC-1326-SM-4BRV2 30-39 years, female 67.1
GTEX-XPVG-1826-SM-4B64X 50-59 years, male 66.5
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 99.6
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 72.0
FF:10014-101C5 62,83,84 years, mixed 99.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.